PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00796g03006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22342.3 Da    PI: 4.8922
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00796g03006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.31.9e-13346346
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                              +++++ r+  +s+  + ++KKA+ELSvL d+e+ +iifs++ ++
  Peinf101Scf00796g03006.1  3 SKSEIERKALLSRKVASLFKKAQELSVLSDVEIGIIIFSPDENV 46
                              68899999999*99**************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-4152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.507441IPR002100Transcription factor, MADS-box
PfamPF003191.9E-11546IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-14585IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MASKSEIERK ALLSRKVASL FKKAQELSVL SDVEIGIIIF SPDENVPITW PSETQARQRL  60
TRYLGHSEFQ RSKKLVLHEN YLREKLEARV EENRKMEERM EMEFLFNQLV MGMSIYALDA  120
RQLKGLIELA ALKKANVEER KKQLDEEKKK QLNEEDAQPV EPPVVGGESG TGSAPAEGDN  180
NNAGEEKDDE RPKDSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685140.0FJ168514.1 Petunia x hybrida type I MADS box transcription factor (MADSy9) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB6DT661e-110B6DT66_PETHY; Type I MADS box transcription factor (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.16e-12AGAMOUS-like 36